Evidence of SARS-CoV-2 re-infection with a different genotype

  • Philippe Colson
    Affiliations
    IHU Méditerranée Infection, 19-21 boulevard Jean Moulin, 13005 Marseille, France

    Aix-Marseille Univ., Institut de Recherche pour le Développement (IRD), Microbes Evolution Phylogeny and Infections (MEPHI), Assistance Publique – Hôpitaux de Marseille (AP-HM), 19-21 boulevard Jean Moulin, 13005 Marseille, France
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  • Michael Finaud
    Affiliations
    Etablissement d'Hébergement pour Personnes Agées Dépendantes Saint-Barthélemy Fondation Saint-Jean-de-Dieu, 72 Avenue Claude Monet, 13014 Marseille, France
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  • Nicolas Levy
    Affiliations
    Assistance Publique – Hôpitaux de Marseille (AP-HM), Hôpital de la Timone, Laboratoire de Génétique Moléculaire, 13005 Marseille, France

    INSERM, MMG – U1251, Aix Marseille Univ., 27 boulevard Jean Moulin, 13005 Marseille, France
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  • Jean-Christophe Lagier
    Affiliations
    IHU Méditerranée Infection, 19-21 boulevard Jean Moulin, 13005 Marseille, France

    Aix-Marseille Univ., Institut de Recherche pour le Développement (IRD), Microbes Evolution Phylogeny and Infections (MEPHI), Assistance Publique – Hôpitaux de Marseille (AP-HM), 19-21 boulevard Jean Moulin, 13005 Marseille, France
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  • Didier Raoult
    Correspondence
    Corresponding author at: IHU Méditerranée Infection, 19-21 boulevard Jean Moulin, 13005 Marseille, France.
    Affiliations
    IHU Méditerranée Infection, 19-21 boulevard Jean Moulin, 13005 Marseille, France

    Aix-Marseille Univ., Institut de Recherche pour le Développement (IRD), Microbes Evolution Phylogeny and Infections (MEPHI), Assistance Publique – Hôpitaux de Marseille (AP-HM), 19-21 boulevard Jean Moulin, 13005 Marseille, France
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Published:November 15, 2020DOI:https://doi.org/10.1016/j.jinf.2020.11.011
      We read with great interest in this journal the description by Tomassini et al. of six possible cases of re-infection with SARS-CoV-2 in England.
      • Tomassini S.
      • Kotecha D.
      • Bird P.
      • Folwell A.
      • Biju S.
      • Tang J.W.
      Setting the criteria for SARS-CoV-2 reinfection – six possible cases.
      The characterization and extent of such re-infections are currently increasingly investigated, and their implications are a growing concern.
      • Overbaugh J.
      Understanding protection from SARS-CoV-2 by studying reinfection.
      Indeed, the emergence of SARS-CoV-2 in December 2019 in China was followed by the worldwide spread of the virus and its circulation for several months (https://coronavirus.jhu.edu/map.html). In several European countries, including France, the outbreak almost ended during spring, but a second COVID-19 outbreak occurred in late summer (https://covid19-country-overviews.ecdc.europa.eu/). We observed such an evolution of SARS-CoV-2 diagnoses at the Méditerranée Infection Institute in Marseille, France, where we have performed more than 300,000 SARS-CoV-2 qPCR since end of January 2020 and have detected the first infection at the end of February (https://www.mediterranee-infection.com/covid-19/). As the SARS-CoV-2 pandemic is still on-going, a current major issue is whether or not and how long immune responses to the virus are protective. In this regard, it is important to prove the cases of reinfection, which were first reported in August in Hong Kong.
      • Overbaugh J.
      Understanding protection from SARS-CoV-2 by studying reinfection.
      Tomassini et al. defined re-infection as qPCR positivity at least 28 days after a previous qPCR-positive Covid-19 episode that was followed by clinical recovery and at least one negative qPCR.
      • Tomassini S.
      • Kotecha D.
      • Bird P.
      • Folwell A.
      • Biju S.
      • Tang J.W.
      Setting the criteria for SARS-CoV-2 reinfection – six possible cases.
      We report here a patient with two infections at a 105 days interval despite seroconversion. In addition to Tomassini et al.’ criteria for re-infection, we demonstrated by genotypic analyses that the two successive infections involved distinct viral variants and that samples tested were collected from the same individual.

      Keywords

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